CVE-2026-31972

SAMtools is a program for reading, manipulating and writing bioinformatics file formats. The `mpileup` command outputs DNA sequences that have been aligned against a known reference. On each output line it writes the reference position, optionally the reference DNA base at that position (obtained from a separate file) and all of the DNA bases that aligned to that position. As the output is ordered by position, reference data that is no longer needed is discarded once it has been printed out. Under certain conditions the data could be discarded too early, leading to an attempt to read from a pointer to freed memory. This bug may allow information about program state to be leaked. It may also cause a program crash through an attempt to access invalid memory. This bug is fixed in versions 1.21.1 and 1.22. There is no workaround for this issue.
Configurations

Configuration 1 (hide)

cpe:2.3:a:samtools:samtools:*:*:*:*:*:*:*:*

History

19 Mar 2026, 18:54

Type Values Removed Values Added
CVSS v2 : unknown
v3 : unknown
v2 : unknown
v3 : 9.8
CPE cpe:2.3:a:samtools:samtools:*:*:*:*:*:*:*:*
First Time Samtools samtools
Samtools
References () https://github.com/samtools/samtools/commit/3036eb9af945fcef359427a2d359855553da4adf - () https://github.com/samtools/samtools/commit/3036eb9af945fcef359427a2d359855553da4adf - Patch
References () https://github.com/samtools/samtools/security/advisories/GHSA-72c8-4jf3-f27p - () https://github.com/samtools/samtools/security/advisories/GHSA-72c8-4jf3-f27p - Vendor Advisory
References () http://www.openwall.com/lists/oss-security/2026/03/18/11 - () http://www.openwall.com/lists/oss-security/2026/03/18/11 - Mailing List, Third Party Advisory

19 Mar 2026, 00:16

Type Values Removed Values Added
New CVE

Information

Published : 2026-03-18 21:16

Updated : 2026-03-19 18:54


NVD link : CVE-2026-31972

Mitre link : CVE-2026-31972

CVE.ORG link : CVE-2026-31972


JSON object : View

Products Affected

samtools

  • samtools
CWE
CWE-416

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